Software and Data

All the computational tools and pipelines are available on Github. We also share our data on the single-cell portal for easy access.

Jin lab Github‍ ‍| single cell portal

In vivo Perturb-CLEAR (Wu et al. 2026)

• Github

Whole-brain in vivo Perturb-seq (Shi et al. 2026)

• Github

• Hugging Face

Massively parallel in vivo Perturb-seq (Zheng et al. Cell 2024)

• GitHub

• GEO: GSE249416

• single-cell portal: AAV screen (RNA, AAV barcode) and perturbation screen (RNA, gRNA)

• Neuroglancer portal of AAV-SCH9 transduced brain

In vivo Perturb-seq (Jin et al. Science 2020)

• GitHub

• GEO: GSE157977

• single-cell portal